The title is the Greens’ third in a row under head coach Barak Bachar, who is said to be leaving the club for Red Star Belgrade in Serbia.
Israel garnered two medals on Friday at the international judo championship in Qatar followed by a third the next day.
The Israeli youth team won four gold medals, plus two silver and two bronze medals, and also set a record for the team score in the boys' under-21 competition.
The champions will get the chance to represent Israel at the World Championship and European Championship.